Top 15 Best Mystery Anime of All Time

Get your notepads ready, let’s solve some (anime) mysteries!

Top 15 Best Mystery Anime
Mystery anime is usually filled with mysterious deaths, crimes, events, people or even objects. The reason why they are so fun to watch is that they always keep viewers on the edge of their seats. They are full of twists and turns that often make viewers wonder what is going to happen next. Viewers also love to follow the clues or guess how the series is going to end.

Moreover, watching mystery themed anime series allows the viewers to visit interesting and fascinating worlds. It also gives the viewers a sense of understanding about the dark side of people or how justice is going to prevail. Without further ado, here’s our list of the 15 best mystery anime of all time.

Note: While not all of these entries would be considered traditional examples of the genre, they all contain a strong element of mystery to them which we felt justified their inclusion on the list.

The unknown awaits with our list of the top 15 best mystery anime


MAL Rated 8.24, Ranked #257 | Aired Winter 2011 | Produced by Bones

Top 15 Best Mystery Anime - Gosick
Victorique never goes to class. Instead, she spends her time reading at the library and figuring out unresolved mysteries. She later meets Kazuya, a Japanese transfer student, and they get involved in even more cases! Sure to satisfy even casual fans of the genre, despite it being a more traditional example of a mystery anime.

Suzumiya Haruhi no Yuuutsu (The Melancholy of Haruhi Suzumiya)

MAL Rated 8.09, Ranked #420 | Aired Spring 2006 | Produced by Kyoto Animation

Top 15 Best Mystery Anime - Suzumiya Haruhi no Yuuutsu
Haruhi forms the SOS Brigade, which specializes in all things supernatural. Little does Haruhi know that she holds a greater power than that of aliens, time travelers, and espers – the very things she holds such a burning interest in.


MAL Rated 8.18, Ranked #319 | Aired Spring 2012 | Produced by Kyoto Animation

Top 15 Best Mystery Anime - Hyouka
Oreki joins the Kamiyama High School’s Classic Literature Club to prevent it from being abolished. Along with his friends, they investigate a mystery involving the school’s past and the club’s anthology “Hyouka.”

Darker than Black: Kuro no Keiyakusha

MAL Rated 8.27, Ranked #229 | Aired Spring 2007 | Produced by Bones

Top 15 Best Mystery Anime - Darker than Black
‘Contractors,’ humans with special abilities, live alongside ordinary humans. After some ‘contractors’ start to abuse their power, tensions arise between the two factions.

Mirai Nikki (The Future Diary)

MAL Rated 8.18, Ranked #321 | Aired Fall 2011 | Produced by Asread

Top 15 Best Mystery Anime - Mirai Nikki
Yukki spends his time writing a diary on his cell phone and talking to his imaginary friend, Deus Ex Machina. It turns out that Deus is not just a fragment of Yukki’s imagination and that he is the God of Time and Space. He gives Yuki a ‘Future Diary’ and forces him to join a battle royale. Now, Yukki is involved in a deadly game with eleven other diary users. Will he be able to survive?

Death Parade

MAL Rated 8.40, Ranked #153 | Aired Winter 2015 | Produced by Madhouse

Top 15 Best Mystery Anime - Death Parade
After people die, they are sent to a mysterious bar with no memory of having died. In there, they must play Death Games with (unbeknownst to them) their future on the line. An emotionless arbiter then decides who goes to into the abyss, or who would be reincarnated. But, what happens when the arbiter starts to gain emotions?

Vampire Knight

MAL Rated 7.44, Ranked #1764 | Aired Spring 2008 | Produced by Studio Deen

Top 15 Best Mystery Anime - Vampire Knight
The elite boarding school Cross Academy has two different classes: the day class with normal students and the night class with vampire students. Will the humans and vampires learn to co-exist?


MAL Rated 8.41, Ranked #142 | Aired Winter 2010 | Produced by Brain’s Base

Top 15 Best Mystery Anime - Durarara!!
Ikebukuro is home to many curious residents, such as the mysterious gangs called ‘The Dollars’ and ‘Yellow Scarves.’ It is also home to the mysterious assailant known as ‘Slasher’ and the legendary headless rider who roams around Ikebukuro looking for her head! Durarara!! is a unique mystery anime where you’ll be itching to get to have all of your many questions answered.

Higurashi no Naku Koro ni

MAL Rated 8.20, Ranked #289 | Aired Spring 2006 | Produced by Studio Deen

Top 15 Best Mystery Anime - Higurashi no Naku Koro ni
Keiichi moves into the quiet village of Hinamizawa where he meets new friends. To Keiichi, Hinamizawa seems to be a normal and peaceful village, until they prepare for its annual festival. When he learns of the legends and mysteries of Hinamizawa in the past years, Keiichi wonders about what his friends are hiding from him, or if he can trust them at all.


MAL Rated 8.56, Ranked #74 | Aired Summer 2007 | Produced by Brain’s Base

Top 15 Best Mystery Anime - Baccano!
Baccano! follows the story of immortal alchemists crossing paths with American gangsters. With its nonlinear narrative, this mystery anime leaves the viewers to put this story together by themselves.

Boku dake ga Inai Machi

MAL Rated 8.76, Ranked #29 | Aired Winter 2016 | Produced by A-1 Pictures

Top 15 Best Mystery Anime - Boku dake ga Inai Machi
After Satoru’s mother is murdered, he is somehow sent back to the past. Satoru then realizes that he could prevent a kidnapping incident – which took the lives of his classmates – from happening. Will Satoru be able to make things right and solve an 18 year old mystery?

Detective Conan

MAL Rated 8.25, Ranked #246 | Aired Winter 1996 | Produced by TMS Entertainment

Top 15 Best Mystery Anime - Detective Conan
Detective Conan, known for its ‘whodunit’ theme’, follows the story of a high school detective Shinichi Kudou. He gets injected with an experimental drug by unknown individuals and later finds himself in a body of a seven-year-old child.

Shinichi, now known as Conan, helps out with Detective Mouri’s cases while he finds clues about the mysterious individuals who drugged him. But, will Conan be able to turn back to Shinichi? A mystery anime in the vein of the old classics.


MAL Rated 7.92, Ranked #630 | Aired Winter 2012 | Produced by P.A. Works

Top 15 Best Mystery Anime - Another
A transfer student named Kouichi befriends a classmate whom everyone seems to ignore. Later, strange accidents begin to happen to the students of the class. Will Kouichi and his classmates discover the truth behind the curse of Class 3-3?

Death Note

MAL Rated 8.75, Ranked #32 | Aired Fall 2006 | Produced by Madhouse

Top 15 Best Mystery Anime - Death Note
Light Yagami suddenly gets a hold of the mysterious Death Note. A notebook which kills anyone whose name is written on it. After trying it out on criminals, Light becomes obsessed with the idea of ‘creating a new world’ where he could become a god. However, one man stands in Light’s way: L, a famous detective who aims to unmask Light and punish him for his crimes. Who will win in their battle of wits?


MAL Rated 9.17, Ranked #3 | Aired Spring 2011 | Produced by White Fox

Top 15 Best Mystery Anime - Steins;Gate

Rintarou and his friends discover that their invention, the ‘Phone Microwave,’ can actually send emails to the past. SERN, an organization that researches time travel, tracks them down. Rintarou must now go back in time to avoid certain incidents. Will Rintarou be able to save his friends?

Honorable Mentions

Aside from our list of the Top 15 Best Mystery Anime, we also had some extras which we could not help but mention!


Top 15 Best Mystery Anime - Honorable Mention - xxxHolic

xxxHoliC is a story of Watanuki, who has the ability to see ghosts and Yuuko, who has the ability to grant people’s wishes. Together, they encounter supernatural beings and supernatural events.

Danganronpa: Kibou no Gakuen to Zetsubou no Koukousei The Animation

Top 15 Best Mystery Anime - Honorable Mention - Danganronpa: Kibou no Gakuen to Zetsubou no Koukousei The Animation

Danganronpa follows the story of Makoto and his classmates who end up being trapped inside Hope’s Peak Academy. The only way for a student to get out is if they can kill another student without being caught. Who will survive in this deadly, sadistic game?


Top 15 Best Mystery Anime - Honorable Mention - Monster

Monster follows the story of Kenzou, a brain surgeon who is facing the most difficult decision in his life: to save the life of the mayor, or to save the life a child? The decision he makes has far reaching consequences on his life, as well as the lives of those around him.